Description
PALMA aligns two genomic sequences in an optimal way according to its underlying algorithm and trained parameters. The main Python script takes two FASTA files containing the target (e.g. a DNA sequence, part of the genome) and query sequences (e.g. a cDNA or EST sequence).
PALMA creates an alignment using dynamic programming (written in c++), and returns the alignment in a psl like format.
The algorithms will be the ones that will compute optimal local alignments, so if no alignment has been found it is because no alignment got a sufficiently high alignment score.
User Reviews for PALMA FOR MAC 1
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for PALMA FOR MAC
PALMA FOR MAC efficiently aligns genomic sequences using dynamic programming. The output in psl format is precise and helpful.