What is mcl-algorithm FOR LINUX?


mcl-algorithm FOR LINUX


mcl-algorithm is a scalable cluster algorithm for graphs based on stochastic flow. The flow process employed by the algorithm is mathematically sound and intrinsically tied to cluster structure in graphs, which is revealed as the imprint left by the process. The threaded implementation has handled graphs of up to one million nodes within hours, and is widely used in the field of protein family analysis. It comes with a wide range of sibling utilities for handling and analyzing graphs, matrices, and clusterings.



Key Features:



  • Simulates flow using algebraic operations on matrices

  • No high-level procedural instructions for grouping

  • Expansion and inflation operations for flow modeling

  • Adjustable cluster granularity without predefined cluster count

  • Scalable algorithm with worst-case complexity of order Nk^2



Technical Specifications:



  • Algorithm Type: Cluster algorithm

  • Platform: Linux

  • Free to download and use

  • Developed by: Stijn van Dongen



Benefits of MCL Algorithm for Linux:



  • Flexible clustering on various granularity levels

  • No need to specify the number of clusters in advance

  • Inherent relationship between algorithm and cluster structure

  • Mathematically sound flow process for accurate results

  • Supports unsupervised parameter adjustment for optimization


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