Description
AltAnalyze is an open source and cross-platform utility that will allow you to take RNASeq or relatively raw microarray data (CEL files or normalized), identify predicted alternative splicing or alternative promoter changes and view how these changes may affect protein sequence, domain composition, and microRNA targeting.
AltAnalyze is compatible with any RNASeq data (exons and/or junctions), several Affymetrix splicing sensitive array types (Gene 1.0, Exon 1.0, junction) as well as many conventional array-types (e.g., Illumina, Agilent, Affymetrix).
AltAnalyze can be used either as a command-line or as a graphical user interface based app, and it requires no advanced knowledge of bioinformatics programs or scripting.
Alternative regulated exons can be subsequently visualized in the context of proteins, domains and microRNA binding sites with the Cytoscape Plugin DomainGraph.
User Reviews for AltAnalyze FOR MAC 1
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for AltAnalyze FOR MAC
AltAnalyze FOR MAC is a user-friendly tool for analyzing RNASeq and microarray data with predicted alternative splicing. Great for researchers without bioinformatics experience.